R. Quinn Thomas
Professor | Virginia Tech | Data Science Faculty Fellow | Lead of Ecological Forecasting Initiative Research Coordination Network
Ecosystem Dynamics and Forecasting
Ecosystem: We study the forest and freshwater ecosystems upon which society depends
Dynamics: We model how ecosystems change over time in response to land-use, climate change, atmospheric deposition, and management. We measure carbon, water, and energy exchange between ecosystems and the atmosphere using eddy-covariance and biometeorology sensors.
Forecasting: We predict the future of ecosystems by combining observations and ecosystem models using statistical techniques.
Data Science Faculty Fellow
Co-director of the Virginia Tech Center for Ecosystem Forecasting
Department of Forest Resources and Environmental Conservation &
Department of Biological Sciences
Virginia Tech
Steger Hall (0477)
Room 315B
1015 Life Science Circle
Blacksburg, VA 24061
rqthomas@vt.edu
@rquinnthomas
Google Scholar
ORCID
GitHub
Projects
Ecological Forecasting Initiative Research Coordination Network (DEB-1926388)
Lead PI of an NSF-sponsored 5-year project that is leading workshops, conferences, and collaborative software development to address the following objectives:
- Define community standards and best practices for developing, sharing, and archiving forecasts and models
- Increase the number and diversity of NEON-enabled (National Ecological Observatory Network) forecasts by developing and hosting the NEON Ecological Forecasting Challenge
- Create educational materials to empower scientists at all career stages to forecast using NEON data products.
- Support the creation of software to produce NEON-enabled forecasts at intensive and collaborative coding-focused workshops
- Align forecast outputs and decision support with the needs of forecast users at mission-driven agencies to guide decision-making, and
- Synthesize forecasts to examine how limits to forecastability vary across ecological systems and scales (e.g., canopy phenology, lake water temperature).
Other current projects
Democratized Cyberinfrastructure for Open Discovery to Enable Research (OAC-2209866)
Cyberinfrastructure Enabling End-to-End Workflows for Aquatic Ecosystem Forecasting (DBI-1933016)
Global Centers Track 2: Building the Global Center for Forecasting Freshwater Futures (OISE-2330211)
In The News
New center showcases Virginia Tech’s strengths in global sustainability
Researchers receive National Science Foundation grant for long-term data research - VT News
Diving Into the Future of Freshwater Forecasting - NEON Science
Researchers cross international boundaries to predict better water quality - VT News
Scientists spurred by a thirst to transform the field of phytoplankton forecasting - VT News
Building the tools to make environmental data more accessible and forecasts more accurate - VT News
A vicious cycle of oxygen loss threatens water quality in lakes - VT News
Virginia Tech pioneers smart reservoirs - Roanoke Times
To ensure safe drinking water, experts forecast the health of lakes and reservoirs - VT News
Using data to predict the future of ecosystems - VT News
Testing the water: Virginia Tech team launches system to predict water conditions - VT News
Global Change Center researchers to forecast water quality with NSF support - VT News
Study forecasts growth rates of loblolly pine trees through first half of 21st century - VT News
Publications
Click for a full list of publications
Recent (2024 - )
Carey, C.C., R. S.D. Calder, R.J. Figueiredo, R.B. Gramacy, M.E. Lofton, M.E. Schreiber and R.Q. Thomas. 2024. A framework for developing a real-time lake phytoplankton forecasting system to support water quality management in the face of global change. Ambio: awaiting issue https://doi.org/10.1007/s13280-024-02076-7
Dalton, J.N. Miller, T.L. Greaver, R.D. Sabo, K. G. Austin, J.N. Phelan, R.Q. Thomas and C. Clark. 2024. Regional variation in growth and survival responses to atmospheric nitrogen and sulfur deposition for 140 tree species across the United States. Frontiers in Forests and Global Change 7:1426644. https://doi.org/10.3389/ffgc.2024.1426644
Dietze, M., E.P. White, A. Abeyta, C. Boettiger, N. Bueno Watts, C.C. Carey, R. Chaplin-Kramer, R.E. Emanuel, S.K. Morgan Ernest, R. Figueiredo, M.D, Gerst, L.R. Johnson, M.A. Kenney, J.S. McLachlan, I.C. Paschalidis, J.A. Peters, C.R. Rollinson, J. Simonis, K. Sullivan-Way, R. Q. Thomas, G.M. Wardle, A. Willson, J. Zwart. 2024. Near-term Ecological Forecasting for Climate Change Action. Nature Climate Change: Awaiting Issue. https://doi.org/10.1038/s41558-024-02182-0
Figueiredo, R.J., C.C. Carey, and R.Q. Thomas. Translational Edge and Cloud Computing to Advance Lake Water Quality Forecasting. Accepted at Computing in Science & Engineering.
Lofton, M.E., T.N. Moore, W.M. Woelmer, R.Q. Thomas, and C.C. Carey. 2024. A modular curriculum to teach undergraduates ecological forecasting improves student and instructor confidence in their data science skills. Bioscience: Awaiting issue. https://doi.org/10.1093/biosci/biae089
McNellis, R., N. Smith, R.Q. Thomas, and N. van Gestel. 2024. Winter cover cropping increases albedo and latent heat flux in a Texas High Plains agro-ecosystem. Ecosphere 15:e4753 https://doi.org/10.1002/ecs2.4753
Meyer, M.F., M.E. Harlan, R.T. Hensley, Q. Zhan, N.S. Börekçi, T. Bucak, A.N. Cramer, J.Feldbauer, R. Ladwig, J.P. Mesman, I.A. Oleksy, R.M. Pilla, J.A. Zwart, E. Calamita, N.J. Gubbins, M.E. Lofton, D.A. Maciel, N.S. Marzolf, F. Olsson, A.N. Thellman, R.Q.Thomas, M.J. Vlah. 2024. Hacking Limnology Workshops and DSOS23: Growing a Workforce for the Nexus of Data Science, Open Science, and the Aquatic Sciences. Limnology and Oceanography Bulletin 33: 35-38. https://doi.org/10.1002/lob.10607
Olsson, F, T.N. Moore, C.C. Carey, A. Breef-Pilz, and R.Q. Thomas. 2024. A multi-model ensemble of baseline and process-based models improves the predictive skill of near-term lake forecasts. Water Resources Research 60: e2023WR035901 https://doi.org/10.1029/2023WR035901
Park, S., R.Q. Thomas, C.C. Carey, A.D. Delany, Y.-J. Ku, M.E. Lofton, and R.J. Figueiredo. 2024. “FaaSr: Middleware for Serverless and Cross-Platform Function-as-a-Service Scientific Workflows in R” in 2024 IEEE 20th International Conference on e-Science (e-Science), Osaka, Japan, 2024 pp. 1-10. https://10.1109/e-Science62913.2024.10678660
Park, S., Y.-J. Ku, V. Daneshmand, R.Q. Thomas, C.C. Carey, R.J. Figuerido. 2024. FaaSr: R package for Function-as-a-Service. Journal of Open Source Software 9: 7027 https://doi.org/10.21105/joss.07027
Phelan J, G. Van Houtven, C Clark, J. Buckley, J. Cajka, A. Hargrave, K. Horn, R.Q. Thomas, and R. Sabo. 2024. Climate Change Could Negate U.S. Forest Ecosystem Services Benefits Gained Through Reductions in Nitrogen and Sulfur Deposition. Scientific Reports 14: 10767 https://doi.org/10.1038/s41598-024-60652-z
Wander, H.L., R.Q Thomas, T.N. Moore, M.E. Lofton, A. Breef-Pilz, C.C. Carey. 2024. Data assimilation experiments inform monitoring needs for near-term ecological forecasts in a eutrophic reservoir. Ecosphere 15: e4752. https://doi.org/10.1002/ecs2.4752
Wheeler, K., M. Dietze, D. LeBauer, J. Peters, A.D. Richardson, R.Q. Thomas, K. Zhu, U. Bhat, S. Munch, R.F Buzbee, M. Chen, B. Goldstein, J.S. Guo, D. Hao, C. Jones, M. Kelly-Fair, H. Liu, C. Malmborg, N. Neupane. D. Pal, A. Ross, V. Shirey, Y. Song, M. Steen, E.A. Vance, W.M. Woelmer, J. Wynne and L. Zachmann. 2024. Predicting Spring Phenology in Deciduous Broadleaf Forests: An Open Community Forecast Challenge. Agricultural and Forest Meteorology 345: 09810 https://doi.org/10.1016/j.agrformet.2023.109810
Woelmer, W.M., R.Q. Thomas, F. Olsson, B.G. Steele, K.C. Weathers, and C.C. Carey. 2024. Process-Based Forecasts of Lake Water Temperature and Dissolved Oxygen Outperform Null Models, with Variability Over Time and Depth. Ecological Informatics 83: 102825. https://doi.org/10.1016/j.ecoinf.2024.102825
Pre-prints undergoing peer review
Holthuijzen, M.F., R.B. Gramacy, C.C. Carey, D.M. Higdon, and R.Q. Thomas. Synthesizing data products, mathematical models, and observational measurements for lake temperature forecasting. arXiv. https://doi.org/10.48550/arXiv.2407.03312
Olsson, F., C.C. Carey, C. Boettiger, G. Harrison, R. Ladwig, M.F. Lapeyrolerie, A.S.L. Lewis, M.E. Lofton, F. Motealegre-Mora, J.S. Rebaey, C.J. Robbins. X. Yang, and R.Q. Thomas. What can we learn from 100,000 freshwater forecasts? A synthesis from the NEON Ecological Forecasting Challenge. ESS Open Archive https://doi.org/10.22541/essoar.171458144.44104603/v1
Paíz, R., R.Q. Thomas, C. C. Carey, E. de Eyto, A. Delany, R. Poole, P. Nixon, M. Dillane, I.D. Jones, D.C. Pierson, V. McCarthy, S. Linnane, E. Jennings. Near-term lake water temperature forecasts can be used to anticipate the ecological dynamics of freshwater species. SSRN. http://dx.doi.org/10.2139/ssrn.4888712.
Bio
A.B. Dartmouth College, Hanover, NH (2001 - 2005)
M.S. University of New Hampshire, Durham, NH (2005 - 2007)
Ph.D. Cornell University, Ithaca, NY (2007 - 2012)
Post-doc, National Center for Atmospheric Research, Boulder, CO (2012 - 2013)
Assistant Professor, Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA (2013 - 2019)
Associate Professor, Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA (2019 - 2024)
Associate Professor, Department of Biological Sciences, Virginia Tech, Blacksburg, VA (2021 - 2024)
Visiting Scholar, Dartmouth College, Hanover, NH (2021 - 2022)
Visiting Scientist, Terrestrial Ecosystem Research Network, University of Queensland, Brisbane, QLD, Australia (2022)
Data Science Faculty Fellow, College of Science, Virginia Tech, Blacksburg, VA (2022 - present)
Professor, Department of Forest Resources and Environmental Conservation, Virginia Tech, Blacksburg, VA (2024 - present)
Professor, Department of Biological Sciences, Virginia Tech, Blacksburg, VA (2024 - present)
Team Members
Ph.D. students
Bibek Kandel
Post-docs
Mary Lofton (Co-mentored with Cayelan Carey)
Maike Holthuijzen (Co-mentored with Cayelan Carey)
Freya Olsson (Co-mentored with Cayelan Carey)
Data Scientist
Austin Delany
Alumni
Joshua Rady (PhD)
Benjamin Ahlswede (PhD)
Michael Graham (PhD; Geospatial and Environmental Analysis; co-advised with Megan O’Rourke)
Kevin J. Horn (Post-doc)
Annika Jersild (MS)
Ryan McClure (Post-doc; Co-mentored with Cayelan Carey)
Wyatt McCurdy (MS)
Tadhg Moore (Post-doc; Co-mentored with Cayelan Carey)
Laura Puckett (UG)
John Smith (PhD in Statistics; co-advised with Leah Johnson)
Teaching
FREC 3044: Environmental Data Science
FREC 5884: Ecological Forecasting
FREC 5034: Ecosystem Dynamics
Join Us
Interested Ph.D. or Masters of Science students should send an email letter of inquiry containing an overview of your research interests and your C.V. Please feel free to contact me with questions about the application process, graduate school at Virginia Tech, or potential research ideas.